Function reference • midi

Cylinder bundle simulation

simulate_bundle(): Generates a cross section of a cylinder bundle

autoplot(<bundle>): Plots a cross section of a cylinder bundle using ggplot2

plot(<bundle>): Plots a cross section of a cylinder bundle

plot3d(): Plots a 3D representation of a cylinder bundle using plotly

MR signal prediction

Models for restricted diffusion in circularly-shaped media

CallaghanCompartment: Callaghan's model for restricted diffusion in a cylinder

NeumanCompartment: Neuman's model for restricted diffusion in a cylinder

SodermanCompartment: Soderman's model for restricted diffusion in a cylinder

StaniszCompartment: Stanisz's model for restricted diffusion in a cylinder

VanGelderenCompartment: Van Gelderen's model for restricted diffusion in a cylinder

Models for diffusion MRI

FreeCompartment: Free compartment class

SphereCompartment: Sphere compartment class

CylinderCompartment: Cylinder compartment class

CylinderBundleCompartment: Cylinder bundle compartment class

Statistical distributions

GammaDistribution: Gamma distribution class

WatsonDistribution: Watson distribution class

Utility functions

bvalue(): B-Value Calculation

rcylinders(): Sample cylinder compartments

run_app(): Runs the MIDI Shiny web application